Rune Andreassen

Scientific publications

Hansen, Sine Alise Hartvigsen; Ramberg, Sigmund ; Kiryushchenko, Nadezhda; Høyheim, Bjørn; Horsberg, Tor Einar; Andreassen, Rune ; Bakke, Marit Jørgensen (2023). De novo high-accuracy transcriptomes from long-read sequencing reveals a wide variety of novel splice variants in copepodids and adult female salmon lice (Lepeophtheirus salmonis). Frontiers in Marine Science. Vol. 10.
https://doi.org/10.3389/fmars.2023.1167402

Ramberg, Sigmund ; Krasnov, Aleksei; Colquhoun, Duncan John; Wallace, Christian; Andreassen, Rune (2022). Expression analysis of Moritella viscosa-challenged Atlantic salmon identifies disease-responding Genes, MicroRNAs and their predicted target genes and pathways. International Journal of Molecular Sciences. Vol. 23.
https://doi.org/10.3390/ijms231911200

Chakraborty, Setu; Woldemariam, Nardos Tesfaye ; Visnovska, Martina; Rise, Matthew L.; Boyce, Danny; Santander, Javier; Andreassen, Rune (2022). Characterization of miRNAs in Embryonic, Larval, and Adult Lumpfish Provides a Reference miRNAome for Cyclopterus lumpus. 19 p. Biology (Basel). Vol. 11.
https://doi.org/10.3390/biology11010130

Shwe, Alice ; Krasnov, Aleksei; Visnovska, Martina; Ramberg, Sigmund ; Østbye, Tone-kari K; Andreassen, Rune (2022). Differential Expression of miRNAs and Their Predicted Target Genes Indicates That Gene Expression in Atlantic Salmon Gill Is Post-Transcriptionally Regulated by miRNAs in the Parr-Smolt Transformation and Adaptation to Sea Water. International Journal of Molecular Sciences. Vol. 23.
https://doi.org/10.3390/ijms23158831

Shwe, Alice ; Krasnov, Aleksei; Visnovska, Martina; Ramberg, Sigmund ; Østbye, Tone-kari K; Andreassen, Rune (2022). Expression Analysis in Atlantic Salmon Liver Reveals miRNAs Associated with Smoltification and Seawater Adaptation. 19 p. Biology (Basel). Vol. 11.
https://doi.org/10.3390/biology11050688

Ramberg, Sigmund ; Andreassen, Rune (2021). MicroSalmon: A Comprehensive, Searchable Resource of Predicted MicroRNA Targets and 3’UTR Cis-Regulatory Elements in the Full-Length Sequenced Atlantic Salmon Transcriptome. Non-coding RNA. Vol. 7.
https://doi.org/10.3390/ncrna7040061

Ramberg, Sigmund ; Høyheim, Bjørn; Østbye, Tone-Kari K; Andreassen, Rune (2021). A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. 22 p. Frontiers in Genetics. Vol. 12.
https://doi.org/10.3389/fgene.2021.656334

Smith, Nicole; Umasuthan, Navaneethaiyer; Kumar, Surendra; Woldemariam, Nardos Tesfaye ; Andreassen, Rune ; Christian, Sherri; Rise, Matthew L. (2021). Transcriptome Profiling of Atlantic Salmon Adherent Head Kidney Leukocytes Reveals That Macrophages Are Selectively Enriched During Culture. Frontiers in Immunology. Vol. 12.
https://doi.org/10.3389/fimmu.2021.709910

Østbye, Tone-Kari K; Woldemariam, Nardos Tesfaye ; Lundberg, Camilla Elise; Berge, Gerd Marit; Ruyter, Bente; Andreassen, Rune (2021). Modulation of hepatic miRNA expression in Atlantic salmon (Salmo salar) by family background and dietary fatty acid composition. Journal of Fish Biology.
https://doi.org/10.1111/jfb.14649

Shwe, Alice ; Østbye, Tone-Kari K; Krasnov, Aleksei; Ramberg, Sigmund ; Andreassen, Rune (2020). Characterization of Differentially Expressed miRNAs and Their Predicted Target Transcripts during Smoltification and Adaptation to Seawater in Head Kidney of Atlantic Salmon. 19 p. Genes. Vol. 11.
https://doi.org/10.3390/genes11091059

Research reports

Andreassen, Rune ; Shwe, Alice (2023). Characterization of differentially expressed miRNAs and their predicted target transcripts associated with smoltification and seawater adaptation in Atlantic salmon. ISBN: 978-82-8364-536-1. 95 p. OsloMet-storbyuniversitetet. Vol. 2023.

Woldemariam, Nardos Tesfaye ; Andreassen, Rune (2021). MicroRNAs and their role in virus disease and immune response in Atlantic salmon. ISBN: 978-82-8364-304-6. 69 p. OsloMet-storbyuniversitetet. Vol. 2021.

Kopatz, Alexander; Andreassen, Rune ; Kling, Daniel; Randa, Rolf; Forfang, Kristin; Hagen, Snorre; Eiken, Hans Geir (2017). Family groups of brown bears in Sør-Varanger, Norway Application of SNP and STR markers to reconstruct pedigrees from DNA-samples noninvasively collected 2004-2016. ISBN: 978-82-17-02006-6. 40 p. NIBIO. Vol. 3.
http://hdl.handle.net/11250/2493447

Kopatz, Alexander; Andreassen, Rune ; Eiken, Hans Geir; Aarnes, Siv; Tobiassen, Camilla; Randa, Rolf; Wikan, Steinar; Hagen, Snorre (2014). Female brown bears in Sør-Varanger, Norway: localities and mother-cub relationships analyzed by genetic methods. ISBN: 978-82-17-01363-1. 25 p. Bioforsk. Vol. 9.
http://hdl.handle.net/11250/2451524

Andreassen, Rune ; Wartiainen, I; Tobiassen, C; Aarnes, S; Randa, R; Turtumøygard, S; Wikan, S; Eiken, Hans Geir (2009). Binneområder i Sør Varanger; undersøkelse av områdebruk og identifisering av mulig avkom ved feltobservasjoner og DNA analyse. ISBN: 978-82-17-00576-6. 14 p. Bioforsk jord og miljø, Svanhovd. Prosjektnr 4310101

Wartiainen, Ingvild; Andreassen, Rune ; Tobiassen, Camilla; Aarnes, Siv; Randa, Rolf; Turtumøygard, Stein; Wikan, Steinar; Eiken, Hans Geir (2009). Binneområder i Sør-Varanger. ISBN: 978-82-17-00576-6. 14 p. Bioforsk. Vol. 4.
http://hdl.handle.net/11250/2468777

Andreassen, Rune (2002). Minisatellite instability studied in one GC-rich (D7S22) and one AT-rich (DYF155S1) minisatellite locus. ISBN: 82-8072-048-0. 75 p. Universitetet i Oslo.

Dissemination

Andreassen, Rune (2023). CRISPR som metode. BIO2023 NML Conference. NITO.

Andreassen, Rune ; Ramberg, Sigmund (2023). MicroSalmon: Comprehensive Databases for Predicted microRNA Target Transcripts and Cis-Regulatory Elements in the 3’UTRs of the Full-Length Sequenced Atlantic Salmon Transcriptome. Plant and animal genome meeting 30. PAG.

Andreassen, Rune ; Shwe, Alice ; Krasnov, Aleksei; Østbye, Tone-Kari K (2023). Atlantic salmon miRNAs associated with smoltification and sea water adaptation. International Society for Animal Genetics 39 international conference. International Society for Animal Genetics.

Andreassen, Rune ; Shwe, Alice ; Krasnov, Aleksei; Østbye, Tone-Kari K (2023). Atlantic salmon miRNAs associated with smoltification and sea-water adaptation. International Society for Animal Genetics 39 international conference. ISAG.

Davidson, Matthew; Andreassen, Rune (2022). The tiny secret to healthier fish.
https://www.oslomet.no/en/research/featured-resear

Ramberg, Sigmund ; Østbye, Tone-Kari K; Høyheim, Bjørn; Andreassen, Rune (2022). A de novo full-length mRNA transcriptome generated from hybrid-corrected PacBio long-reads improves the transcript annotation and identifies thousands of novel splice variants in Atlantic Salmon. Aquaculture workshop Plan and Animal Genome Conference 2022. Plant and Animal Genome Conference Aquaculture.

Ramberg, Sigmund ; Andreassen, Rune (2022). A transcriptome generated from hybrid-corrected PacBio long-reads in Atlantic Salmon, which provides 71000 high-quality full-length sequenced mRNAs, and identifies thousands of novel splice variants. European Aquaculture Society meeting 2022. European Aquaculture Society .

Rise, Matthew L.; Caballero-Solares, Albert; Xue, Xi; Andreassen, Rune (2022). AQUACULTURE NUTRIGENOMICS AND IMMUNOGENOMICS RESEARCH: TOWARD DEVELOPMENT OF SUSTAINABLE AND THERAPEUTIC DIETS FOR SALMON. Aquaculture Canada and WAS North America 2022. Aquaculture Canada and WAS North America.

Andreassen, Rune (2022). Insights into miRNAs in teleost fish. Seminar at Research Institute for Farm Animal Biology, University of Rostock. Research Institute for Farm Animal Biology, Univ of Rostock .

Lekanova, Nadezhka; Hansen, Sine Alise Hartvigsen; Ramberg, Sigmund ; Høyheim, Bjørn; Andreassen, Rune ; Horsberg, Tor Einar; Bakke, Marit Jørgensen (2022). A de novo full-length mRNA transcriptome for Lepeophtheirus salmonis. SeaLice2022. Sea Lice conference international.